李宁
博士
副教授
福建省厦门市翔安区翔安南路4221号周隆泉楼B2-320
Dr.
Ning Li
Associate Professor
ZhouLongQuan Building Room B2-320, 4221 Xiang'an South Road, Xiang'an District, Xiamen City, Fujian Province
Tel:
Fax:
Email:
ningli88@xmu.edu.cn
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个人履历
Brief CV
- 厦门大学 海洋与地球学院 副教授（2024.02-）
- 美国南加州大学 生物学系 博士后（2017-2023）
- 美国奥本大学 渔业与水产养殖系 博士（2013-2017）
- 中国海洋大学 水产养殖学 本科（2007-2011）
- Associate professor, College of Ocean and Earth Sciences, Xiamen University (2024.02-)
- Postdoc, Department of Biological Sciences, University of Southern California (2017-2023)
- Ph.D., School of Fisheries, Aquaculture & Aquatic Sciences, Auburn University (2013-2017)
- B.S., College of Aquaculture, Ocean University of China (2007-2011)
研究方向
Research Interests
- 鱼类基因组资源开发与遗传育种；种群遗传学与进化基因组学；水生动物生理学和生物能量学
- Fish Genomics and Genetic Breeding; Population Genetics and Evolutionary Genomics; Aquatic Animal Physiology and Bioenergetics
代表性论文
Selected Publications
- Li N, Flanagan BA, Edmands S. The role of mitochondria in sex-and age-specific gene expression in a species without sex chromosomes. Proceedings of the National Academy of Sciences. 2024, 121(24): e2321267121.
- Li N, Griffith AW, Manahan DT. Integrative biological analyses of responses to food deprivation reveal resilience mechanisms in sea urchin larvae. Molecular Ecology. 2024, 33(12): e17120. (“From the Cover” article; Perspective by Dr. George N. Somero: “From molecules to morphology: How food supply influences the larvae of sea urchins across all levels of biological organization”)
- Li N, Pan FTC, Griffith AW, DellaTorre MB, Manahan DT. Integration of physiological and gene expression analyses to reveal biomarkers for protein dynamic mechanisms regulating higher growth and survival among larval oyster families (Crassostrea gigas). Aquaculture. 2023, 577: 739918.
- DellaTorre MB, Pan FTC, Griffith AW, Li N, Manahan DT. Thermal sensitivities of respiration and protein synthesis differ among larval families of the Pacific oyster, Crassostrea gigas. Journal of Experimental Biology. 2022, 225(22): jeb244518. (Outstanding Paper Prize shortlist)
- Li N, Bao L, Zhou T, Yuan Z, Liu S, Dunham R, Li Y, Wang K, et al. Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation. BMC Genomics. 2018, 19: 952.
- Li N, Zhou T, Geng X, et al. Identification of novel genes significantly affecting growth in catfish through GWAS analysis. Molecular Genetics and Genomics, 2018, 293: 587-599. (Among the 20 most-frequently cited articles for 2021 Impact Factor)
专利
Patent
- 李琪, 陈辰, 孙楠, 李宁. 一种用于魁蚶家系鉴定的多重PCR方法 CN104561355A
- Li Q, Chen C, Sun N, Li N. A multiplex PCR system for parentage identification in the ark shell (Scapharca broughtonii). Ocean University of China, 2015. 04. 29 (patent #: CN104561355A)
学术任职
Affiliations/Service
- Associate editor: Genomics Communications (e-ISSN 3066-3857)
- Editorial board (young scholar): Progress in Fishery Sciences (渔业科学进展；ISSN 2095-9869 CN 37-1466/S)
- Guest editor: Frontiers in Marine Science
- Grant reviewer: Czech Science Foundation
- Journal reviewer: Aquaculture; Aquaculture Reports; BMC Biology; BMC Genomics; Chemosphere; Comparative Biochemistry and Physiology; Environmental Pollution; GENETICS; G3 (Genes | Genomes | Genetics); International Journal of Biological Macromolecules; Journal of Marine Science and Engineering; Journal of Oceanology and Limnology; Journal of Zhejiang University-SCIENCE B; Marine Biotechnology; Molecular Ecology; Molecular Ecology Resources; Reviews in Aquaculture; Scientific Data.
- 演化生物学（本科生）
- 海洋生物育种前沿理论与技术（研究生）
- Evolutionary Biology (Undergraduate students)
- Cutting-edge Theories and Technologies in Mariculture Breeding (Graduate students)
- 2024-2028 国家重点研发计划海洋农业与淡水渔业科技创新专项，“东海滩涂浅海碳汇型生态养殖关键技术与装备” ，子课题负责人
- 2024-2026 海水养殖教育部重点实验室开放课题，“不同地理群体大黄鱼高温耐受能力测评及生理响应机制研究”，主持
- 2024-2025 中央高校基本科研业务费专项资金，“大黄鱼群体遗传学与不同地理群体环境适应性的研究”，主持
- 2024-2028 National Key R&D Program, "Key technologies and equipment for carbon sink-based ecological aquaculture in the shallow coastal mudflats of the East China Sea", co-PI
- 2024-2026 Ministry of Education’s Key Laboratory of Mariculture, “Thermal tolerance and response mechanisms in different geographical populations of large yellow croaker (Larimichthys crocea)”, PI
- 2024-2025 Fundamental Research Funds for the Central Universities, “Population genetics and environmental adaptation of different geographical populations of large yellow croaker (Larimichthys crocea)”, PI
2023: Nan Qiang Early Career Outstanding Scientist (南强青年拔尖人才), Xiamen University, China
2022: 10th APS Intersociety Meeting for Comparative Physiology Travel Award, American Physiological Society, USA
2021, 2022: Postdoctoral Scholar Travel Award, University of Southern California, USA
2020: Professional Development Award, Society for Integrative & Comparative Biology, USA
2018: 3rd Annual Postdoc Scholar Research Symposium Award, University of Southern California, USA
2018: Distinguished expert at Shaanxi Province Fisheries Research and Workstation, China
2016: Travel fellowship for Sixth annual short course on statistical genetics and genomics, University of Alabama at Birmingham, USA
2016: Graduate research and travel fellowship, Auburn University, USA
2013-2017: National scholarship for studying abroad, Chinese Ministry of Education (top 0.1%)
2012: National fellowship for outstanding graduate students, China (top 1%)
2008, 2009: National fellowship for outstanding undergraduate students, China (top 1%)
课题组为鱼类遗传学实验室，主要研究方向包括：鱼类基因组资源开发、经济鱼类遗传育种、种群遗传学和进化基因组学、鱼类进化生物学等。
实验室负责人为徐鹏教授，实验室科研骨干为周涛副教授和李宁副教授。
欢迎对鱼类遗传育种感兴趣的同学老师来交流、参观、或加入我们！
Our research group focuses on fish genetics and breeding, with main areas including: fish genome resource development, genetic breeding of economically important fish species, population genetics and evolutionary genomics, and fish evolutionary biology.
The research group is led by Dr. Peng Xu, with key researchers Drs. Tao Zhou and Ning Li.
We welcome students and faculty who are interested in fish genetics and breeding to communicate, visit, or join our research group!
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Chen X, Miao L, He Q, Ke Q, Pu F, Li N, Zhou T, Xu P. Chromosome-level genome assembly for three geographical stocks of large yellow croaker (Larimichthys crocea). Scientific Data, 2024, 11: 1364.
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Li N*, Flanagan BA, Edmands S. The role of mitochondria in sex- and age-specific gene expression in a species without sex chromosomes. PNAS. 2024.
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Li N, Griffith AW, Manahan DT. Integrative biological analyses of responses to food deprivation reveal resilience mechanisms in sea urchin larvae. Molecular Ecology. 2023. (“From the Cover” article)
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Li N, Pan FTC, Griffith AW, DellaTorre MB, Manahan DT. Integration of physiological and gene expression analyses to reveal biomarkers for protein dynamic mechanisms regulating higher growth and survival among larval oyster families (Crassostrea gigas). Aquaculture. 2023, 577: 739918.
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Waldbieser GC, Liu S, Yuan Z, Older CE, Gao D, Shi C, Bosworth BG, Li N, et al. Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. BMC Biology. 2023, 21(1): 1-23.
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DellaTorre MB, Pan FTC, Griffith AW, Li N, Manahan DT. Thermal sensitivities of respiration and protein synthesis differ among larval families of the Pacific oyster, Crassostrea gigas. Journal of Experimental Biology. 2022, 225(22): jeb244518. (Outstanding Paper Prize shortlist)
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Li N*, Flanagan BA, Edmands S. Food deprivation exposes sex‐specific trade‐offs between stress tolerance and life span in the copepod Tigriopus californicus. Ecology and Evolution. 2022, 12: e8822.
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Flanagan BA, Li N, Edmands S. Mitonuclear interactions alter sex-specific longevity in a species without sex chromosomes. Proceedings of the Royal Society B. 2021, 288: 20211813.
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Li P, Liu Q, Li J, Wang F, Wen S, Li N*. Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics. 2021, 1:100791.
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Li N*, Flanagan BA, Partridge M, Huang EJ, Edmands S. Sex differences in early transcriptomic responses to oxidative stress in the copepod Tigriopus californicus. BMC genomics. 2020, 21: 1-11.
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Li N, Bao L, Zhou T, Yuan Z, Liu S, Dunham R, Li Y, Wang K, et al. Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation. BMC Genomics. 2018, 19: 952.
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Li N, Zhou T, Geng X, et al. Identification of novel genes significantly affecting growth in catfish through GWAS analysis. Molecular Genetics and Genomics, 2018, 293: 587-599. (Among the 20 most-frequently cited articles for 2021 Impact Factor)
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Zhou T, Li N, Jin Y, et al. Chemokine CC motif ligand 33 is a key regulator of teleost fish barbel development. Proceedings of the National Academy of Sciences, 2018, 115: E5018-E5027.
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Li N, Wang X, Liu Z. Next-Generation Sequencing Technologies and the Assembly of Short Reads into Reference Genome Sequences. Bioinformatics in Aquaculture: Principles and Methods. Wiley. 2017.
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Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, et al. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. Nature communications, 2016, 7: 11757.
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Li N, Li Q, Kong L, Yu H. Development of three multiplex PCR primer sets for ark shell (Scapharca broughtonii) and their validation in parentage assignment. Journal of Ocean University of China, 2016, 15: 311-317.
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Li N, Li Q, Jin M, Kong L, Yu H. Isolation and characterization of 20 microsatellite loci in Neverita didyma (Röding 1798). Conservation Genetics Resources, 2012, 4: 479-481.
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