徐鹏
博士
南强特聘教授、国家杰出青年科学基金获得者
Peng Xu
Minjiang Chair Professor
Nanqiang Distinguished Professor National Science Fund For Distinguished Young Scholar
Tel:
Fax:
Email:
xupeng77@xmu.edu.cn
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个人履历
Brief CV
- 厦门大学生物学系 本科(1995-1999)
BS. Department of Biology, Xiamen University (1995-1999)
- 中国科学院 海洋研究所 硕士 (1999-2002)
MS. Institute of Oceanology, CAS (1999-2002)
- 美国奥本大学渔业系博士(2003-2007)
Ph.D. School of Fishery and Aquaculture, Auburn University (2003-2007)
- 美国普渡大学生物学系博士后(2007-2008)
Postdoc. Department of Biology, Purdue University (2007-2008)
- 中国水产科学研究院生物技术研究中心副研究员(2009)、研究员(2014)、主任(2015)
Chinese Academy of Fishery Sciences(2009-2016)
- 厦门大学海洋与地球学院 闽江学者特聘教授(2016-)
Professor, College of Ocean and Earth Sciences, Xiamen University (2016- )
- 厦门大学海洋与地球学院副院长(2021-)
Deputy Dean of College of Ocean and Earth Sciences(2021-)
- 厦门大学 南强特聘教授(2022-)
研究方向
Research Interests
- 鱼类基因组资源开发、经济鱼类的基因组辅助选育、种群遗传学和进化基因组学、鱼类适应性进化
- Fish Genomics and Genetics, Genome-assistant Breeding and Selection, Population Genetics and Evolution Genomics, Genetic Mechanism of Adaptive Evolution
代表性论文
Selected Publications
- Chen L, Xu J, Sun XW, Xu P*, Research advances and future perspectives of genomics and genetic improvement in allotetraploid common carp, Reviews in Aquaculture, 2022.
- Zhao J, Bai HQ, Ke QZ, Li BJ, Wang H, Chen BH, Pu F, Zhou T, Xu P*, Genomic selection for parasitic ciliate Cryptocaryon irritans resistance in large yellow croaker, Aquaculture, 531, 2021.
- Zhou T, Chen BH, Ke QZ, Zhao J, Pu F, Wu YD, Chen L, Zhou ZX, Bai YL, Pan Y, Gong J, Zheng WQ, Xu P*, Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea), Frontier in Genetics, 11, 2020.
- Xu P*, Xu J#, Liu GJ#, Chen L, Zhou ZX, Peng WZ, Jiang YL, Zhao ZX, Sun YH, Wu YD, Chen BH, Pu F, Feng JX, Luo J, Chai J, Zhang HY, Wang H, Dong CJ, Jiang WK, Sun XW, The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio, Nature Communications, 10, 2019.
- Xu J#, Li JT#, Jiang YL, Peng WZ, Yao ZL, Chen BH, Feng JY, Ji PF, Liu GM, Liu ZJ, Tai RY, Dong CJ, Sun XQ, Zhao ZX, Zhang Y, Wang J, Li SQ, Zhao YF, Yang JH, Sun XW, Xu P*, Genomic basis of adaptive evolution: the survival of Amur ide (Leuciscus waleckii) in an extremely alkaline environment, Molecular Biology and Evolution, 34(1): 145-159, 2017.
- Xu P#, Zhang XF#, Wang XM#, Li JT#, Liu GM#, Kuang YY#, Xu J#, Zheng XH#, Ren LF, Wang GL, Zhang Y, Huo LH, Zhao ZX, Cao DC, Lu CY, Li C, Zhou Y, Liu ZJ, Fan ZH, Shan GL, Li XG, Wu SX, Song LP, Hou GY, Jiang YL, Jeney Z, Yu D, Wang L, Shao CJ, Song L, Sun J, Ji PF, Wang J, Li Q, Xu LM, Sun FY, Feng JX, Wang CH, Wang SL, Wang BS, Li Y, Zhu YP, Xue W, Zhao L, Wang JT, Gu Y, Lv WH, Wu KJ, Xiao JF, Wu JY, Zhang Z, Yu J*, Sun XW*, Genome sequence and genetic diversity of the common carp, Cyprinus carpio, Nature Genetics, 46(11): 1212-1219, 2014.
- 徐鹏*, 柯巧珍, 苏永全, 刘家富, 郑炜强, 大黄鱼种质资源保护与利用现状及建议, 水产学报, 2021
专利
Patent
- 胡天宇, 邓雅程, 陈佳, 王大鹏, 张榕鑫, 徐鹏, 游伟伟, 骆轩, LIN JIAO. 一种基于视频图像处理的水生动物心率检测方法 202210023274.7
- 颜梦珍, 李碧君, 陈琳, 徐鹏. 一种荷包红鲤CRISPR/Cas9基因编辑方法 202210545915.5
- 徐鹏, 陈葆华, 郑炜豪, 柯巧珍, 潘滢. 一种大黄鱼基因组育种芯片及应用 202010899506.6
- 赵吉, 徐鹏, 柯巧珍, 郑炜强. 基于全基因组选择的大黄鱼抗刺激隐核虫病的选育方法 ZL202011171385.X
- 徐鹏, 吕红皂, 陈葆华, 濮菲. 一种快速鉴定南北方花鲈群体的InDel分子标记方法 ZL201910892376.0
- 柯巧珍, 徐鹏, 余训凯, 潘滢, 刘兴彪, 濮菲, 赵吉, 刘志民. 一种大黄鱼家系构建及优良家系选育的方法 ZL201911222860.9
- 许建,冯敬岩,徐鹏. 用于鲤鱼种质鉴定的SNP标记组合、方法及用途 ZL 201510315761
- 张研,徐鹏,李晓敏,孙效文. 一种评估鲤鱼种群遗传多样性的REMAP标记 ZL 201410734479
- 许建,崔军,徐鹏. 一种快速鉴定镜鲤的方法 ZL201410276992
- 徐鹏, 董传举, 陈坤慈, 孙效文. 一种区分乌鳢和斑鳢的引物对、试剂盒以及PCR-RFLP检测方法 ZL201310241474
- 徐鹏、董传举、孙效文. 鱼类图像快速采集装置 实用新型专利 ZL201320019588.6
学术任职
Affiliations/Service
- Associate Editor (Genetics section), Aquaculture (2023- )
- 海水养殖生物育种全国重点实验室 主任(2022-)
- 大黄鱼育种国家重点实验室 主任(2021-2022)
- 中国动物学会鱼类学分会第十届委员会理事(2021-)
- 福建省海洋经济生物遗传育种重点实验室 主任 (2019-)
- Editorial Board, Reproduction and Breeding
- Editorial Board, Marine Biotechnology (2017- )
- 中国水产学会水产生物技术专业技术委员会委员(2016-)
- Editorial board, GENE (2014-)
- Associate Editor, Frontiers in Genetics (2011-2023 )
本科生: 《遗传学》《演化生物学》 研究生: 《演化生物学》(本研通修课程)《海洋生物育种前沿理论与技术》《研究生论文写作》
主持项目:
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国家杰出青年科学基金项目“鱼类遗传学与遗传育种”(2023-2027)(32225049)
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国家自然科学基金联合基金项目“大黄鱼刺激隐核虫抗性性状的遗传解析及抗虫育种分子基础研究”(2022-2025)(U21A20264)
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国家重点研发计划-政府间国际科技创新合作重点专项“鲤异源四倍体的性别决定基因鉴定及功能分化研究”(2020-2023)(2019YFE0119000)
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中国-波兰科技人员交流项目“鲤疱疹病毒抗性的遗传基础解析”(2021-2022)
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国家自然科学基金面上项目“极端碱性环境中硬骨鱼类碳酸酐酶基因的适应性进化和遗传机制研究”(2019-2022)(31872561)
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广东省自然科学基金面上项目“中国花鲈南北方群体本土适应性的表观调控机制研究”(2019-2022)(2019A1515010731)
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福建省科技计划高校产学合作项目“大黄鱼抗刺激隐核虫新品系选育应用”(2019-2022)(2019N5001)
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大黄鱼育种国家重点实验室自研项目“基于第三代测序技术的大黄鱼基因组全面解析”(2018-2020)(LYC2017ZY01)
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深圳市知识创新计划基础研究项目“中国花鲈南北群体分化和温度适应性的遗传基础解析”(2018-2020)(JCYJ20170818142601870)
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东方鲀种业创新与产业化工程“东方鲀基因组资源库建设与开发应用”(2017-2020)(2017FJSCZY03)
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厦门大学校长基金“中国沿海花鲈种质资源采集和种群遗传学分析”(2016-2018)(20720160110))
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国家自然科学基金优秀青年科学基金项目“鱼类基因组学和遗传育种”(2015-2017)(31422057)
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中国水产科学研究院基本科研业务费课题“瓦氏雅罗鱼对高碱环境的适应性分子机制研究”(2014-2016)(2014A03YQ01)
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国家高技术研究发展计划(863计划)“鲤鱼等功能基因组资源开发及其数据库与网站构建”(2011-2015)(2011AA100401)
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国家自然科学基金青年基金项目“基于转录组学的瓦氏雅罗鱼高碱适应机制研究”(2012-2014)(31101893)
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农业部948项目“高信息含量指纹图谱技术的引进和在鲤物理图谱构建中的应用”(2010)(2010Z11)
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国家公益性行业(农业)科研专项“水产分子育种共性技术的建立与应用”之“鲤鲫分子标记和基因高通量开发应用及分子育种数据库与网络平台构建”课题(2009-2013)
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国家高技术研究发展计划(863计划)“品质优良的转基因鲤与转基因唐鱼的品种培育”(2009-2011)(2009AA10Z105)
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中央级公益性科研院所基本科研业务费专项“基于细菌人工染色体的鲤鱼基因组学研究”(2009-2011)
参加项目:
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福建省科技重大专项“大黄鱼和鲍鱼良种选育”(2020-2023)(2020NZ08003)
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大黄鱼育种国家重点实验室开放课题“大黄鱼体型性状遗传定位和解析研究”(2017-2019)(LYC2017RS05)
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农业部948项目“基于单核苷酸多态性芯片的鱼类经济性状基因精确解析技术引进”(2013)
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国家自然科学基金联合基金重点项目“海峡两岸杂色鲍种质资源评估与主要养殖性状的遗传基础研究”(2013-2016)(U1205121)
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国家公益性行业(农业)科研专项“水产分子育种共性技术的建立与应用”(2009-2013)(200903045)
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2021年第一批省级高层次人才·现有人才A类,2021
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爱思唯尔2020中国高被引学者,2020
- 厦门大学海洋与地球学院中天海洋奖教金,2020
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第十五届中国青年科技奖,2019
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第四批国家“万人计划”科技创新领军人才,2019
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创新人才推进计划·中青年科技创新领军人才,2018
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福建省特支“双百计划”科技创新领军人才,2018
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厦门市第十批“双百计划”海外高层次人才,2018
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福建省“闽江学者”特聘教授,2016
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首届中国水产青年科技奖,2016
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鲤优良品种选育技术与产业化,国家科技进步二等奖,第五完成人,2015
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第十七届茅以升北京青年科技奖,茅以升科技教育基金会,2014
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基于细菌人工染色体的鲤鱼基因组学研究,水科院科技进步二等奖,第1完成人,2014
厦门大学海洋与地球学院鱼类遗传学实验室,主要研究方向包括:鱼类基因组资源开发、经济鱼类遗传育种、种群遗传学和进化基因组学、鱼类进化生物学等。实验室负责人为徐鹏教授,近十年先后主持或参与国家863计划、国家重点研发计划、国家自然科学基金等国家级和省部级科研课题近20项,在鱼类基因组学和遗传育种研究方面取得丰硕成果。近三年培养研究生15名,其中3人次获国家奖学金,目前合作博士后2名,在学博士生16名,硕士生12名。
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Research advances and future perspectives of genomics and genetic improvement in allotetraploid common carp
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Chromosome-Level Assembly of the Southern Rock Bream (Oplegnathus fasciatus) Genome Using PacBio and Hi-C Technologies
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The Draft Genome of Cryptocaryon irritans Provides Preliminary Insights on the Phylogeny of Ciliates
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Genome-wide association study identifies genomic loci of sex determination, gonadal weight and gonadosomatic index traits in Takifugu bimaculatus
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Sex-Specific Genomic Region Identification and Molecular Sex Marker Development of Rock Bream (Oplegnathus fasciatus)
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Genome-Scale Phylogenetic and Population Genetic Studies Provide Insight Into Introgression and Adaptive Evolution of Takifugu Species in East Asia
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Chromosome-level genome of Poropuntius huangchuchieni provides a diploid progenitor-like reference genome for the allotetraploid Cyprinus carpio
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First genomic prediction and genome-wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)
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Performance of genome prediction for morphological and growth-related traits in Yellow River carp
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GWAS identified candidate variants and genes associated with acute heat tolerance of large yellow croaker
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Genome-Wide Association Study Identifies Genomic Loci of Sex Determination and Gonadosomatic Index Traits in Large Yellow Croaker (Larimichthys crocea)
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Genomic selection for parasitic ciliate Cryptocaryon irritans resistance in large yellow croaker
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Genome-Wide Association Analysis Reveals the Genetic Architecture of Parasite (Cryptocaryon irritans) Resistance in Large Yellow Croaker (Larimichthys crocea)
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Editorial: Genetic dissection of important traits in aquaculture: genome-scale tools development, trait localization and regulatory mechanism exploration
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Construction of a high-density genetic linkage map and QTL mapping for growth-related traits in Takifugu bimaculatus
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Transcriptome analysis reveals the temporal gene expression patterns in skin of large yellow croaker (Larimichthys crocea) in response to Cryptocaryon irritans infection
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Genome-wide association study of body shape-related traits in large yellow croaker (Larimichthys crocea)
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Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
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Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea)
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Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
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The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio,
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Dealing with complex polypoidy genomes: considerations for assembly and annotation of the common carp genome
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10-Genomics in the common carp
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An Ultra-high Density Linkage Map and QTL Mapping for Sex and Growth-related Traits of Common Carp (Cyprinus carpio).
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Construction of the BAC Library of Small Abalone (Haliotis diversicolor) for Gene Screening and Genome Characterization.
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Genome Wide Identification of Scavenger Receptors Class A in Common Carp (Cyprinus carpio) and Their Expression Following Aeromonashydrophila Infection.
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Phylogeny and Evolution of Multiple Common Carp (Cyprinus carpio L.) Populations Clarified by Phylogenetic Analysis Based on Complete Mitochondrial Genomes.
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A First Generation BAC-based Physical Map of the Half-smooth Tongue Sole (Cynoglossus semilaevis) Genome.
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Development and Evaluation of the First High-throughput SNP Array for Common Carp (Cyprinuscarpio).
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Comparative Transcriptome Analysis Reveals the Genetic Basis of Skin Color Variation inCommon Carp.
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Genome and Genetic Diversity of the Common Carp (Cyprinus carpio).
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A Dense Genetic Linkage Map for Common Carp and Its Integration with a BAC-Based Physical Map.
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A Consensus Linkage Map Provides Insights on Genome Character and Evolution in Common Carp (Cyprinus carpio L.).
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Gene Expression Changes Leading Extreme Alkaline Tolerance in Amur Ide (Leuciscuswaleckii) Inhabiting Soda Lake.
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Transcriptome Sequencing and Analysis of Wild Amur ide (Leuciscus waleckii) Inhabiting an Extreme Alkaline-Saline Lake Reveals Insights into Stress Adaptation.
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Identification of Common Carp (Cyprinus carpio) MicroRNAs and MicroRNA-related SNPs.
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Genome-Wide SNP Discovery from Transcriptome of Four Common Carp Strains.
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Molecular Characterization of CART, AgRP, and MC4R Genes and Their Expression with Fasting and Re-feeding in Common Carp (Cyprinus carpio).
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High Throughput Mining and Characterization of Microsatellites from Common Carp Genome.
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Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics.
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Genetic Linkage Mapping and Analysis of Muscle Fiber-related QTLs in Common Carp (Cyprinus carpio L.).
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Generation of the First BAC-based Physical Map of the Common Carp Genome.
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Transcriptome Profiling of Embryonic Development Rate in Rainbow Trout Advance Backcross Introgression Lines.
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Genomic Insight into the Common Carp (Cyprinus carpio) Genome by Sequencing Analysis of BAC-end Sequences.
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Construction and Characterization of the BAC Library for Common Carp Cyprinus Carpio L. and Establishment of Microsynteny with Zebrafish Danio Rerio.
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A BAC-based Physical Map of the Channel Catfish Genome. Genomics.
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Channel Catfish BAC-end Sequences for Marker Development and Assessment of Syntenic Conservation with Other Fish Species.
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Characterization and Expression Analysis of Bactericidal Permeability-increasing Protein (BPI) Antimicrobial Peptide Gene from Channel Catfish Ictalurus punctatus.
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